PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239804.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 252aa    MW: 27810.1 Da    PI: 5.9167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239804.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.3e-063584154
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +r  ++erE++ R++ N+ f eL + l  +    ++ + Ka+iL +A++ +k+L
  XP_008239804.1 35 KRIHKSEREKQKREHFNELFLELADALELN----QQNNGKASILCEATRLLKDL 84
                    68899**********************998....68899999******999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.9E-732103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.46E-63284No hitNo description
SuperFamilySSF474591.44E-113499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.9793484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGSQDPVPAA DKANVTEASV RGACSGKKIQ GKIPKRIHKS EREKQKREHF NELFLELADA  60
LELNQQNNGK ASILCEATRL LKDLIGQIEY LQKENASLLS ESNYMTVEKN ELREDNSALE  120
TQIEKLHSEI EDKVVQSKPD LNAAPPCAEL RPEVASHFTG TSISLPTQDH SLQQAPAVFV  180
MPLCPDLQSY PLPDATQLTS NTTSHVSKPH ARYPTSVDSW PSQLLGEKPT AGKESRQLGN  240
STNTCRSRET DP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239805.10.0PREDICTED: transcription factor bHLH47
RefseqXP_008239804.10.0PREDICTED: transcription factor bHLH47
SwissprotQ9SN743e-67BH047_ARATH; Transcription factor bHLH47
TrEMBLM5WAB81e-180M5WAB8_PRUPE; Uncharacterized protein
STRINGGLYMA17G10740.17e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82232531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.33e-56bHLH family protein